Jul 2024 // journal-article
Making Epidemiological and Clinical Studies FAIR Using the Example of COVID-19
Datenbank-Spektrum
Iris Pigeot; Wolfgang Ahrens; Johannes Darms; Juliane Fluck; Martin Golebiewski; Horst K. Hahn; Xiaoming Hu; Timm Intemann; Elisa Kasbohm; Toralf Kirsten; Sebastian Klammt; Sophie Anne Ines Klopfenstein; Bianca Lassen-Schmidt; Manuela Peters; Ulrich Sax; Dagmar Waltemath; Carsten Oliver Schmidt
2024 // conference-paper
Annotation-Efficient Strategy for Segmentation of 3D Body Composition
Proceedings of Machine Learning Research
Philipp, L.; de Rooij, M.; Hermans, J.; Rutten, M.; Hahn, H.; van Ginneken, B.; Hering, A.
DOI:
2024 // conference-paper
Deformable current-prior registration of DCE breast MR images on multi-site data
Progress in Biomedical Optics and Imaging - Proceedings of SPIE
Geißler, K.; Ambroladze, A.; Papenberg, N.; Koller, T.L.; Amer, H.; Fallenberg, E.M.; Kurt, S.A.; Ingrisch, M.; Hahn, H.K.
DOI: 10.1117/12.3006738
2024 // journal-article
Improving assessment of lesions in longitudinal CT scans: a bi-institutional reader study on an AI-assisted registration and volumetric segmentation workflow
International Journal of Computer Assisted Radiology and Surgery
Hering, A.; Westphal, M.; Gerken, A.; Almansour, H.; Maurer, M.; Geisler, B.; Kohlbrandt, T.; Eigentler, T.; Amaral, T.; Lessmann, N.; Gatidis, S.; Hahn, H.; Nikolaou, K.; Othman, A.; Moltz, J.; Peisen, F.
DOI: 10.1007/s11548-024-03181-4
2024 // journal-article
Radiomics workflow definition & challenges - German priority program 2177 consensus statement on clinically applied radiomics
Insights into Imaging
Floca, R.; Bohn, J.; Haux, C.; Wiestler, B.; Zöllner, F.G.; Reinke, A.; Weiß, J.; Nolden, M.; Albert, S.; Persigehl, T.; Norajitra, T.; Baeßler, B.; Dewey, M.; Braren, R.; Büchert, M.; Fallenberg, E.M.; Galldiks, N.; Gerken, A.; Götz, M.; Hahn, H.K.; Haubold, J.; Haueise, T.; Große Hokamp, N.; Ingrisch, M.; Iuga, A.-I.; Janoschke, M.; Jung, M.; Kiefer, L.S.; Lohmann, P.; Machann, J.; Moltz, J.H.; Nattenmüller, J.; Nonnenmacher, T.; Oerther, B.; Othman, A.E.; Peisen, F.; Schick, F.; Umutlu, L.; Wichtmann, B.D.; Zhao, W.; Caspers, S.; Schlemmer, H.-P.; Schlett, C.L.; Maier-Hein, K.; Bamberg, F.
DOI: 10.1186/s13244-024-01704-w
2024 // journal-article
Cooperative AI training for cardiothoracic segmentation in computed tomography: An iterative multi-center annotation approach
European Journal of Radiology
Lassen-Schmidt, B.; Baessler, B.; Gutberlet, M.; Berger, J.; Brendel, J.M.; Bucher, A.M.; Emrich, T.; Fervers, P.; Kottlors, J.; Kuhl, P.; May, M.S.; Penzkofer, T.; Persigehl, T.; Renz, D.; Sähn, M.-J.; Siegler, L.; Kohlmann, P.; Köhn, A.; Link, F.; Meine, H.; Thiemann, M.T.; Hahn, H.K.; Sieren, M.M.
DOI: 10.1016/j.ejrad.2024.111534
2023 // conference-paper
CNN-based Whole Breast Segmentation in Longitudinal High-risk MRI Study: Initial Findings on Quality vs. Quantity of Training Annotations
Informatik aktuell
Ambroladze, A.; Hahn, H.K.; Amer, H.; Ingrisch, M.; Gerken, A.; Wenzel, M.; Püsken, M.; Mittermeier, A.; Engel, C.; Schmutzler, R.; Fallenberg, E.M.
DOI: 10.1007/978-3-658-41657-7_35
2023 // conference-paper
Iterative Method to Register Longitudinal MRI Acquisitions in Neurosurgical Context
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Canalini, L.; Klein, J.; Gerken, A.; Heldmann, S.; Hering, A.; Hahn, H.K.
DOI: 10.1007/978-3-031-33842-7_23
2023 // journal-article
A machine learning method for the identification and characterization of novel COVID-19 drug targets
Scientific Reports
Schultz, B.; DeLong, L.N.; Masny, A.; Lentzen, M.; Raschka, T.; van Dijk, D.; Zaliani, A.; Hansen, A.F.; Sabine; Rüping, K.S.; Burmeister, J.; Kohlhammer, J.; Sarau, G.; Christiansen, S.; Kannt, A.; Zaliani, A.; Foldenauer, A.C.; Claussen, C.; Resch, E.; Frank, K.; Gribbon, P.; Kuzikov, M.; Keminer, O.; Laue, H.; Hahn, H.; Hirsch, J.; Wischnewski, M.; Günther, M.; Archipovas, S.; Kodamullil, A.T.; Gemünd, A.; Schultz, B.; Steinborn, C.; Ebeling, C.; Fernández, D.D.; Hermanowski, H.; Fröhlich, H.; Klein, J.; Lentzen, M.; Jacobs, M.; Hofmann-Apitius, M.; Knieps, M.; Krapp, M.; Wendland, P.J.; Wegner, P.; Khatami, S.G.; Springstubbe, S.; Linden, T.; Fluck, J.; Fröhlich, H.
DOI: 10.1038/s41598-023-34287-5
2022 // other
Comparison of different automatic solutions for resection cavity segmentation in postoperative MRI volumes including longitudinal acquisitions
arXiv
Canalini, L.; Klein, J.; de Barros, N.P.; Sima, D.M.; Miller, D.; Hahn, H.
DOI: 10.48550/arXiv.2210.07806
2022 // journal-article
Radiomics Features of the Spleen as Surrogates for CT-Based Lymphoma Diagnosis and Subtype Differentiation
Cancers
Enke, J.S.; Moltz, J.H.; D’anastasi, M.; Kunz, W.G.; Schmidt, C.; Maurus, S.; Mühlberg, A.; Katzmann, A.; Sühling, M.; Hahn, H.; Nörenberg, D.; Huber, T.
DOI: 10.3390/cancers14030713
2022 // journal-article
Robust Segmentation Models Using an Uncertainty Slice Sampling-Based Annotation Workflow
IEEE Access
Chlebus, G.; Schenk, A.; Hahn, H.K.; Van Ginneken, B.; Meine, H.
DOI: 10.1109/ACCESS.2022.3141021
2021 // other
The Brain Tumor Sequence Registration (BraTS-Reg) Challenge: Establishing Correspondence Between Pre-Operative and Follow-up MRI Scans of Diffuse Glioma Patients
arXiv
Baheti, B.; Chakrabarty, S.; Akbari, H.; Bilello, M.; Wiestler, B.; Schwarting, J.; Calabrese, E.; Rudie, J.; Abidi, S.; Mousa, M.; Villanueva-Meyer, J.; Fields, B.K.K.; Kofler, F.; Shinohara, R.T.; Iglesias, J.E.; Mok, T.C.W.; Chung, A.C.S.; Wodzinski, M.; Jurgas, A.; Marini, N.; Atzori, M.; Müller, H.; Grosbröhmer, C.; Siebert, H.; Hansen, L.; Heinrich, M.P.; Canalini, L.; Klein, J.; Gerken, A.; Heldmann, S.; Hering, A.; Hahn, H.K.; Meng, M.; Bi, L.; Feng, D.; Kim, J.; Zeineldinal, R.A.; Karar, M.E.; Mathis-Ullrich, F.; Burgert, O.; Abderezaei, J.; Pionteck, A.; Chopra, A.; Kurt, M.; Yan, K.; Yan, Y.; Tang, Z.; Ma, J.; Nasser, S.A.; Kurian, N.C.; Meena, M.; Shamsi, S.; Sethi, A.; Tustison, N.J.; Avants, B.B.; Cook, P.; Gee, J.C.; Tian, L.; Greer, H.; Niethammer, M.; Hoopesar, A.; Hoffmannas, M.; Dalcaar, A.V.; Christodoulidis, S.; Estiene, T.; Vakalopoulou, M.; Paragios, N.; Marcus, D.S.; Davatzikos, C.; Sotiras, A.; Menze, B.; Bakas, S.; Waldmannstetter, D.
DOI: 10.48550/arXiv.2112.06979
2021 // journal-article
Making COVID-19 research data more accessible—building a nationwide information infrastructure,COVID-19-Forschungsdaten leichter zugänglich machen – Aufbau einer bundesweiten Informationsinfrastruktur
Bundesgesundheitsblatt - Gesundheitsforschung - Gesundheitsschutz
Schmidt, C.O.; Fluck, J.; Golebiewski, M.; Grabenhenrich, L.; Hahn, H.; Kirsten, T.; Klammt, S.; Löbe, M.; Sax, U.; Thun, S.; Pigeot, I.; Ahrens, W.; Darms, J.; Henke, J.; Hu, X.; Klopfenstein, S.; Langnickel, L.; Lassen-Schmidt, B.; Pohlabeln, H.; Lieser, M.; Näher, A.-F.; Scholz, M.; Vorisek, C.; Waltemath, D.; Wünsche, H.
DOI: 10.1007/s00103-021-03386-x
2021 // journal-article
The International Radiomics Platform - An Initiative of the German and Austrian Radiological Societies - First Application Examples
RoFo Fortschritte auf dem Gebiet der Rontgenstrahlen und der Bildgebenden Verfahren
Overhoff, D.; Kohlmann, P.; Frydrychowicz, A.; Gatidis, S.; Loewe, C.; Moltz, J.; Kuhnigk, J.-M.; Gutberlet, M.; Winter, H.; Völker, M.; Hahn, H.; Schoenberg, S.O.; Attenberger, U.; Bamberg, F.; Baeβler, B.; Barkhausen, J.; Forsting, M.; Furtner-Srajer, J.; Gatidis, S.; Hahn, H.K.; Herold, C.; Kaindl, A.; Kather, J.; Kikinis, R.; Kohlmann, P.; Krause, B.J.; Krombach, G.; Ladd, M.E.; Langs, G.; Lohwasser, S.; Lotz, J.; Pinto Dos Santos, D.; Prosch, H.; Schoenberg, S.O.; Völker, M.; Winther, H.; Zimmermann, M.; Antoch, G.; Anton, F.; Barkhausen, J.; Dörfler, A.; Körber, F.; Layer, G.; Neumann, S.; Schoenberg, S.O.; Weβling, J.; Wucherer, M.; Forstner, R.; Gizewski, E.R.; Hausegger, K.A.; Heinz, G.; Herold, C.; Loewe, C.; Sorantin, E.; Wicke, K.
DOI: 10.1055/a-1244-2775
2021 // journal-article
Erratum: The International Radiomics Platform - An Initiative of the German and Austrian Radiological Societies - First Application Examples (Fortschr Röntgenstr (2021) 193 (276–288) DOI: 10.1055/a-1244-2775),Erratum: Die Internationale Radiomics-Plattform - eine Initiative der Deutschen und Österreichischen Röntgengesellschaften - Erste Anwendungsbeispiele (Fortschr Röntgenstr (2021) 193 (276–288) DOI: 10.1055/a-1244-2775)
RoFo Fortschritte auf dem Gebiet der Rontgenstrahlen und der Bildgebenden Verfahren
Overhoff, D.; Kohlmann, P.; Frydrychowicz, A.; Gatidis, S.; Loewe, C.; Moltz, J.; Kuhnigk, J.-M.; Gutberlet, M.; Winter, H.; Völker, M.; Hahn, H.; Schoenberg, S.O.; Attenberger, U.; Bamberg, F.; Baeβler, B.; Barkhausen, J.; Forsting, M.; Furtner-Srajer, J.; Gatidis, S.; Hahn, H.K.; Herold, C.; Kaindl, A.; Kather, J.; Kikinis, R.; Kohlmann, P.; Krause, B.J.; Krombach, G.; Ladd, M.E.; Langs, G.; Lohwasser, S.; Lotz, J.; Pinto Dos Santos, D.; Prosch, H.; Schoenberg, S.O.; Völker, M.; Winther, H.; Zimmermann, M.; Antoch, G.; Anton, F.; Barkhausen, J.; Dörfler, A.; Körber, F.; Layer, G.; Neumann, S.; Schoenberg, S.O.; Weβling, J.; Wucherer, M.; Forstner, R.; Gizewski, E.R.; Hausegger, K.A.; Heinz, G.; Herold, C.; Loewe, C.; Prosch, H.; Sorantin, E.; Wicke, K.
DOI: 10.1055/a-1475-0537
2021 // journal-article
Anisotropic 3D Multi-Stream CNN for Accurate Prostate Segmentation from Multi-Planar MRI
Computer Methods and Programs in Biomedicine
Meyer, A.; Chlebus, G.; Rak, M.; Schindele, D.; Schostak, M.; van Ginneken, B.; Schenk, A.; Meine, H.; Hahn, H.K.; Schreiber, A.; Hansen, C.
DOI: 10.1016/j.cmpb.2020.105821
2021 // journal-article
Quantitative imaging biomarkers of the whole liver tumor burden improve survival prediction in metastatic pancreatic cancer
Cancers
Gebauer, L.; Moltz, J.H.; Mühlberg, A.; Holch, J.W.; Huber, T.; Enke, J.; Jäger, N.; Haas, M.; Kruger, S.; Boeck, S.; Sühling, M.; Katzmann, A.; Hahn, H.; Kunz, W.G.; Heinemann, V.; Nörenberg, D.; Maurus, S.
DOI: 10.3390/cancers13225732
2021 // journal-article
Automation of data analysis in molecular cancer imaging and its potential impact on future clinical practice
Methods
Theek, B.; Magnuska, Z.; Gremse, F.; Hahn, H.; Schulz, V.; Kiessling, F.
DOI: 10.1016/j.ymeth.2020.06.019
2021 // conference-paper
Comparison of different automatic solutions for resection cavity segmentation in postoperative MRI volumes including longitudinal acquisitions
Progress in Biomedical Optics and Imaging - Proceedings of SPIE
Canalini, L.; Klein, J.; Pedrosa De Barros, N.; Sima, D.M.; Miller, D.; Hahn, H.
DOI: 10.1117/12.2580889
2021 // other
Robust segmentation models using an uncertainty slice sampling based annotation workflow
arXiv
Chlebus, G.; Schenk, A.; Hahn, H.K.; van Ginneken, B.; Meine, H.
DOI: 10.48550/arxiv.2109.14879
2020 // other
Anisotropic 3D Multi-stream CNN for accurate prostate segmentation from Multi-Planar MRI
arXiv
Meyer, A.; Chlebus, G.; Rak, M.; Schindele, D.; Schostak, M.; van Ginneken, B.; Schenk, A.; Meine, H.; Hahn, H.K.; Schreiber, A.; Hansen, C.
DOI: 10.48550/arxiv.2009.11120
2020 // conference-paper
Feasibility of End-To-End Trainable Two-Stage U-Net for Detection of Axillary Lymph Nodes in Contrast-Enhanced CT Based Scans on Sparse Annotations
Progress in Biomedical Optics and Imaging - Proceedings of SPIE
Altun, H.C.; Chlebus, G.; Jacobs, C.; Maine, H.; Van Ginneken, B.; Hahn, H.K.
DOI: 10.1117/12.2551331
2020 // conference-paper
QuantMed: Component-based deep learning platform for translational research
Progress in Biomedical Optics and Imaging - Proceedings of SPIE
Klein, J.; Wenzel, M.; Romberg, D.; Köhn, A.; Kohlmann, P.; Link, F.; Hänsch, A.; Dicken, V.; Stein, R.; Haase, J.; Schreiber, A.; Kasan, R.; Hahn, H.; Meine, H.
DOI: 10.1117/12.2549582
2020 // journal-article
Implementation of eHealth and AI integrated diagnostics with multidisciplinary digitized data: are we ready from an international perspective?
European Radiology
Bukowski, M.; Farkas, R.; Beyan, O.; Moll, L.; Hahn, H.; Kiessling, F.; Schmitz-Rode, T.
DOI: 10.1007/s00330-020-06874-x
